PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00222.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 264aa    MW: 30031.8 Da    PI: 9.0545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00222.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.21.6e-23922202128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgy 82 
                              ppG rF Ptd   v  +L++kv++kk     +i+++d+yk +Pw L+ +v++    + ewy+F++r+k+ a+  +r+ r     g+
  Rsa1.0_00222.1_g00015.1  92 PPGSRFLPTDLGCVRVHLRNKVDKKKSG---FITTMDVYKDDPWLLD-HVENdlfPRGEWYYFTPRNKRGASsCSRTVRgRGGGGT 173
                              9************************955...5**************8.3333233445********999875367888977779** PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                              Wk+t  ++++++k++++ g  ++Lv+ k   + + + t W m+ey l
  Rsa1.0_00222.1_g00015.1 174 WKTTSVKEAIKDKNEKVEGYIQSLVYNKTnVNGEIKPTGWSMKEYCL 220
                              **************************96524556678********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-2885233IPR003441NAC domain
PROSITE profilePS5100530.27391236IPR003441NAC domain
PfamPF023651.9E-1492220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTRDNDKPKV DDESSSKSDD SLLGRGDQEG IGSVSLTRGS KYFEEGSSSS SHNHMNNLEE  60
HQRVMMLRIN QGMRHLQHTD DPNSTKKAPV YPPGSRFLPT DLGCVRVHLR NKVDKKKSGF  120
ITTMDVYKDD PWLLDHVEND LFPRGEWYYF TPRNKRGASS CSRTVRGRGG GGTWKTTSVK  180
EAIKDKNEKV EGYIQSLVYN KTNVNGEIKP TGWSMKEYCL HEKNEDDLVL CHLKGDLKKK  240
GFVEEVKKDN ILPNHLGFVF LVKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-139223318162NAC domain-containing protein 19
4dul_A2e-139223318162NAC domain-containing protein 19
1ut7_B2e-139223318162NO APICAL MERISTEM PROTEIN
1ut7_A2e-139223318162NO APICAL MERISTEM PROTEIN
1ut4_B2e-139223318162NO APICAL MERISTEM PROTEIN
1ut4_A2e-139223318162NO APICAL MERISTEM PROTEIN
3swp_D2e-139223321165NAC domain-containing protein 19
3swp_C2e-139223321165NAC domain-containing protein 19
3swp_B2e-139223321165NAC domain-containing protein 19
3swp_A2e-139223321165NAC domain-containing protein 19
3swm_D2e-139223321165NAC domain-containing protein 19
3swm_C2e-139223321165NAC domain-containing protein 19
3swm_B2e-139223321165NAC domain-containing protein 19
3swm_A2e-139223321165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411314.11e-48hypothetical protein EUTSA_v10017056mg
TrEMBLM4CK451e-112M4CK45_BRARP; Uncharacterized protein
STRINGBra004579.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-25NAC domain containing protein 6